Channel: Siraj Raval

Category: Education

Tags: generative adversarial networksdeep learningpythonsirajhealth techmultiomicstutorialsiraj ravalmachine learningprogramminghealthcaregans

Description: The amount of molecular biology datasets available are growing exponentially every month. Multiomics consist of all the layers of the molecular biome; the genome, epigenome, transcriptome, proteome, and metabolome. In this episode, we're going to learn how each of the layers of the molecular biology stack work, and then look at 3 different real world use cases for Cancer patients (diagnostic, prognostic, and predictive) using open-source python code on GitHub. Then we'll look at how a Generative Adversarial Network can be used to generate synthetic genomic data to battle imbalanced classes. Enjoy! Big thanks to RapidAPI for sponsoring this video series: rapidapi.com/hub?utm_source=Siraj-Raval&utm_medium=DevRel&utm_campaign=DevRel Omics Datasets: omicsdi.org/search More Omics Datasets: ncbi.nlm.nih.gov/geo/browse/?view=series&display=20&zsort=samples Code Credits: Example 1 (CITE-Seq autoencoder prognosis): github.com/naity/citeseq_autoencoder Example 2 (UMAP diagnosis): github.com/NikolayOskolkov/UMAPDataIntegration Example 3 (AlphaFold Protein Folding Prediction: alphafold.ebi.ac.uk colab.research.google.com/github/sokrypton/ColabFold/blob/main/AlphaFold2.ipynb#scrollTo=KK7X9T44pWb7 Example 4 (GAN for Genomic Data Synthesis): github.com/Unique-Divine/GANs-for-Genomics Generative Biome HTML: github.com/marpi/biomes More Learning Resources: AlphaCare Episode 1: youtube.com/watch?v=fGv6VmfGMLc AlphaCare Episode 2: youtube.com/watch?v=PrqdEJZOrWE&t=10s AlphaFold Tutorial: youtube.com/watch?v=GQH-zWUylPY How I Gamify Learning: youtube.com/watch?v=nH85q7gC8uw Learn Machine Learning in 3 months: youtube.com/watch?v=Cr6VqTRO1v0 Multiomics Paper 1: ncbi.nlm.nih.gov/pmc/articles/PMC7003173 Multiomics Paper 2: frontiersin.org/articles/10.3389/fgene.2020.610798/full Follow me: INSTAGRAM: instagram.com/sirajraval TWITTER: twitter.com/sirajraval FACEBOOK: facebook.com/sirajologyyy LINKEDIN: linkedin.com/in/sirajraval Please subscribe for more programming videos! That's what keeps me going.